Documentation
Search Searching query structure(s) against a database
Pairwise alignment Structure superposition
Output files Alignments and hit summaries
Structure files File formats for structures and search databases
STRUCTS Specifying structure file(s) on the command line
Converting How to convert between structure file formats
getchains Extract one or more chains from a structure(s) file
Resources Multi-threading, CPU time, memory use and disk space
E-values What is an E-value and what threshold should you set?
SCOP40 About SCOP40 benchmark and test results
Figures How to make high-quality protein structure alignment figures
Time, memory and disk space Case study: building and running PDB-95
Prebuilt databases in .bca format including SCOP40, PDB and AFDB
