Output files for database search
The search command supports two output options,
-aln and -output.
-aln is human-readable sequence alignments with AQ and E-values
(example below).
-output is tab-separated text with one line for each hit.
Columns in tab-separated output are aq+query+target+evalue by default.
The columns option can be used to choose which fields are included.
1 VATDVSDHDTFWPGWLR---DLICDELLNMG---YAPW--WVKLF-ET--SLKLPVYVGA 49 1hhs
| | | || | | | | | |
1 MGWDYPKCDRAMPNMLRIMASLV---LARKHTTCCSLSHRFYRLANECAQVLSE--MVMC 55 7c2k
50 PAPEQGHTLLGDPSNPDLEVGLSSGQGATDLMGTLLMSITYLVMQLDHTAPHLN------ 103 1hhs
| | ||| | | |
56 --GGSLYVKPG---------GTSSGDATTAYANSVFNICQ-AVTAN------VNALLSTD 97 7c2k
104 -SRIKDMP--S------ACR---------FLD---SYWQGHEEIRQISKSDDAML 137 1hhs
| | | | | | ||||
98 GNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKH--FSMMILSDDAVV 150 7c2k
AQ 0.6293, cols 175, gaps 63 (36.0%), ids 29 (16.6%), E-value 0.0113
