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Reseek downloads
Executables / binaries
https://github.com/rcedgar/reseek/releases/latest
Source code
https://github.com/rcedgar/reseek/
Databases
Please see home pages of the originating databases for references and license terms.
PDB in .bca format
1.7Gb, see
PDB home page
.
SCOP40 in .bca format
with family annotations 14Mb,
SCOP home page
.
AlphaFold/UniProt50 in .bca format
100Gb, see
AFDB home page
. With thanks to Harutyun Sahakyan for building and posting this data.
Video talks
on 16S data analysis posted.
URMAP
ultra-fast read mapper posted (
paper)
.
~20% of taxonomy annotations in SILVA and Greengenes are wrong (
paper
).
Taxonomy prediction is <50% accurate for 16S V4 sequences (
paper
).
97% OTU threshold is wrong for species, should be 99% for full-length 16S, 100% V4 (
paper
).
