OTU table commands

  alpha_div  Calculate alpha diversity metric(s) from OTU table
  alpha_div_rare  Calculate alpha diversity metric(s) from OTU table with rarefaction
  alpha_div_sig  Statistical significance of alpha diversity correlation with metadata
  beta_div  Calculate beta diversity metric(s) from OTU table
  otutab  Generate OTU table
  otutab2biom  Convert OTU table from tabbed to biom (json) format
  otutab_binary  Convert OTU table with counts to presence(1)/absence(0)
  otutab_core  Identify core microbiome in OTU table
  otutab_counts2freqs  Convert counts to frequencies in OTU table
  otutab_forest_classify  Classify samples using random forest
  otutab_forest_train  Train random forest on OTU table
  otutab_group  Sum subsets of samples in OTU table
  otutab_merge  Merge two or more OTU tables
  otutab_octave  Generate octave plot visualizing OTU abundance distribution
  otutab_otu_subset  Extract subset of OTUs from OTU table
  otutab_otus  Extract OTU names from OTU table
  otutab_rare  Rarefy OTU table so that samples have same number of reads
  otutab_sample_subset  Extract subset of samples from OTU table
  otutab_samples  Extract sample names from OTU table
  otutab_select  Identify OTUs which are informative (predictive of metadata)
  otutab_sortotus  Sort OTU table in order of decreasing OTU size
  otutab_stats  Report summary information about OTU table
  otutab_trim  Trim OTU table to remove small counts, OTU and/or samples
  otutab_xtalk  Estimate and filter cross-talk in OTU table
  qiimemap2otutab  Convert QIIME map file to OTU table
  tabbed2otutab  Convert read mapping file (read+OTU) to OTU table
  unbias  Correct abundance bias in OTU table