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otutab_otu_subset command

See also
OTU commands
  OTU table
  Making an OTU table (otutab command)

Extract a subset of OTUs from an OTU table. Input must be in QIIME classic format. The -output option gives a filename for the result.

The -labels option gives the name of a text file containing the OTU identifiers. This is a text file with one OTU identifier per line.


usearch -otutab_otu_subset otutable.txt -labels otu_ids.txt -output subset.txt