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PDB file format
Reseek supports PDB structure files, they must have
.pdb
or
.pdb.gz
extension.
Wikipedia article
Official PDB specification v3.3
Video talks
on 16S data analysis posted.
URMAP
ultra-fast read mapper posted (
paper)
.
~20% of taxonomy annotations in SILVA and Greengenes are wrong (
paper
).
Taxonomy prediction is <50% accurate for 16S V4 sequences (
paper
).
97% OTU threshold is wrong for species, should be 99% for full-length 16S, 100% V4 (
paper
).