Home
Software
Services
About
Contact
11-Apr-2017
UNBIAS paper
:
16S read abundance does not correlate with species abundance!
11-Apr-2017
Search_16S paper
: new method for finding 16S genes in chromosomes and contigs.
28-Dec-2016
USEARCH v9.2 posted.
What's new
.
24-Nov-2016
UPARSE tutorial video
posted on YouTube. Make OTUs from MiSeq reads.
19-Nov-2016
UNCROSS paper
posted. 2% of Illumina reads are assigned to wrong sample!
USEARCH home
UPARSE home
OTUs and denoising
Support
Buy 64-bit
Data analysis service
Getting started
What's new in v10
Installation
Command line
Tutorials and lecture slides
Papers and citing USEARCH
Commands
All commands
Algorithms
Commands by category
search
,
clustering
,
fasta/q files
trees & distance matrices
OTU commands
Command-line options
Support
Technical support
Known bugs
Marker gene metagenomics (16S, ITS...)
OTU / denoising analysis
Quality control for OTUs
Example scripts with test data
Diversity and taxonomy analysis
OTU tables
Topics in sequence analysis
OTU analysis
,
clustering methods
,
taxonomy
,
diversity analysis
,
next-gen reads
Old manuals
Version 9.2
Version 8.1
Version 7
Version 6