| Commands | |
All
commands
Clustering and dereplication:
cluster_otus, cluster_fast,
cluster_smallmem,
derep_fullength, derep_prefix
Database search:
usearch_global, ublast, search_global,
search_local
Chimera filtering and classification:
uchime_ref,
uparse_ref,
uchime_denovo
FASTQ file processing:
fastq_filter,
fastq_mergepairs,
fastq_chars,
fastq_stats
Other:
makeudb_usearch,
makeudb_ublast, findorfs,
maskfasta, sortbylength, sortbysize
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