| Commands | |
All
commands
Clustering and dereplication:
cluster_fast,
cluster_smallmem, derep_fullength, derep_prefix
Database search:
usearch_global, usearch_local, ublast, search_local,
search_global
Alignment:
pairs_global,
pairs_local, allpairs_global, allpairs_local
Chimera filtering:
uchime_ref,
uchime_denovo
Other:
makeudb_usearch,
makeudb_ublast, findorfs, maskfasta, sortbylength, sortbysize
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