|
USEARCH > Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. |
MUSCLE > Multiple sequence alignment. Faster and more accurate than CLUSTALW. |
|
|
UPARSE > OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity measures. |
UCHIME > Chimeric sequence detection. |
|
|
PILER > De novo genome repeat finder. |
PILER-CR > Detection of CRISPR repeats in bacterial genomes. |
|
|
URMAP >> new Ultra-fast read mapper. |
PALS > Whole-genome alignment. |
|
|
PREFAB > Protein Reference Alignment Database. |
MSA benchmark collection > Selected multiple alignment benchmarks in a standardized FASTA format. |
