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Video talks
on 16S data analysis posted.
URMAP
ultra-fast read mapper posted (
paper)
.
~20% of taxonomy annotations in SILVA and Greengenes are wrong (
paper
).
Taxonomy prediction is <50% accurate for 16S V4 sequences (
paper
).
97% OTU threshold is wrong for species, should be 99% for full-length 16S, 100% V4 (
paper
).
USEARCH
Download 32-bit
Buy 64-bit
New in v11
Tech support
Documentation
Commands
Topics
OTU analysis
Sequence search
Sequence clustering
Taxonomy
Diversity
Octave plots
Machine learning
Chimeras
Read quality
Paired reads
OTU errors and biases
Publications
Commentaries and rebuttals
QIIME v1 grossly over-estimates mock community diversity
Analysis of Brown 2017 ITS mock data
Problems with CD-HIT sequence identities
Problems with closed- and open-reference OTUs
Westcott & Schloss MCC OTU metric
Rebuttal to Dr. P. Schloss's comments on OTU identity
Rebuttal to ARB / SILVA team's comments
Comments on Westcott & Schloss 2017 OptiClust