Commands for reads in FASTQ format

  fastq_chars  Report frequencies of Q score ASCII characters in FASTQ file
  fastq_eestats  Report quality/e.e. per position for reads in FASTQ file
  fastq_eestats2  Report number of reads retained at difference length and e.e. cutoffs
  fastq_filter  Filter reads in FASTQ file by e.e. and other criteria
  fastq_join  Concatenate forward (R1) and reverse (R2) paired reads
  fastq_mergepairs  Assemble (merge) paired reads
  fastq_sra_splitpairs  Recover paired reads from SRA interleaved or concatenated format