for visualizing alpha diversity.
shows that one in five taxonomy annotations in SILVA and Greengenes are wrong.
shows that taxonomy prediction accuracy is <50% for V4 sequences.
shows low accuracy of closed- and open-ref. QIIME OTUs.
shows 97% threshold is wrong, OTUs should be 99% full-length 16S, 100% for V4.
UPARSE tutorial video
posted on YouTube. Make OTUs from MiSeq reads.
New in v11
OTU errors and biases
Bugs and fixes in v11
"First ver." is the lowest version number where the bug appeared. Note that the "fixed version" numbers in the table below usually
don't exist as builds
. Your build does [not] have a bug if its version is [not] less than the fixed version number.
(no bugs so far).