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Muscle5

FASTA format

The FASTA sequence file format is widely supported by bioinformatics tools. For a detailed description, see this Wikipedia entry about FASTA. Like most programs, MUSCLE does not support comment lines in FASTA data. The first character in a FASTA file must be a greater-than symbol (>), immediately followed by the label of the first sequence. Gaps in input sequences (dashes or dots, - and .) are discarded. Gaps are inserted into alignments using dashes (-).