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How to cite Muscle v5

A paper is in submission. For now, please cite this preprint:

Edgar, RC (2021), MUSCLE v5 enables improved estimates of phylogenetic tree confidence by ensemble bootstrapping, bioRxiv 2021.06.20.449169. https://doi.org/10.1101/2021.06.20.449169.

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Bibtex

@article{edgar2021muscle,
title={MUSCLE v5 enables improved estimates of phylogenetic tree confidence by ensemble bootstrapping},
author={Edgar, Robert C},
journal={bioRxiv},
year={2021},
publisher={Cold Spring Harbor Laboratory}
}

This page will be updated when a peer-review paper is published.

120,000 new RNA virus species discovered by mining the SRA (paper).

Syncmers are better than minimizers (paper).

Video talks on 16S data analysis posted.

URMAP ultra-fast read mapper (paper).

~20% of taxonomy annotations in SILVA and Greengenes are wrong (paper).

Taxonomy prediction is <50% accurate for 16S V4 sequences (paper).

97% OTU threshold is wrong for species, should be 99% for full-length 16S, 100% V4 (paper).