| calc_distmx | Calculate distance matrix | |
| calc_distmx_smallmem | Calculate distance matrix using memory-saving method | |
| draw_tree | Converts tree to human-readable text file | |
| tree2distmx | Generate distance matrix from tree | |
| tree_cvt | Convert between Newick and tabbed formats | |
| cluster_agg | Cluster sequences and make tree | |
| cluster_aggd | Cluster distance matrix and make tree |