Multiple sequence alignment
Faster and more accurate than CLUSTALW
 

 
News
USEARCH 3.0 released, now includes local search (UBLAST).

UCLUST v2.1 supports very large MUSCLE alignments in < 1 Gb memory.

USEARCH and UCLUST released. Search and clustering hundreds of times faster than BLAST.

MUSCLE v3.8 released.
 
Blog
Send me your big sets!
Multiple protein alignment is dead
Big alignments -- do they make sense?
An unemployed gentleman
Fishing for significance