OTU analysis example scripts
Minimal
OTU pipeline for Illumina unpaired reads
OTUs and ZOTUs (denoised sequences) from Illumina
paired reads
OTUs and ZOTUs, OTU table,
diversity & taxonomy MiSeq 2x250 16S V4 reads
OTUs and ZOTUs, OTU table, diversity & taxonomy MiSeq 2x300 ITS reads
OTUs,
OTU table, diversity & taxonomy 454 16S V3-V5 reads
Tutorial exercises with solutions
Mouse gut samples and mock community, 16S 2x250
V4
Human Microbiome Project samples,
454 reads
MiSeq 2x250 ITS reads