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USEARCH v11

Parsimony score options

 See also
  uparse_ref
  cluster_otus

 
Option Default Description
-uparse_match 0.0 Parsimony score for matching pair of letters.
-uparse_mismatch -1.0 Parsimony score for mismatch.
-uparse_break -3.0 Parsimony score for chimeric breakpoint.