Muscle5 home
Download
About v5
Support / feedback

RAxML support command

Examples

raxml-ng --support tree.newick --bs-trees replicates.newick --bs-metric fbs
raxml-ng --support tree.newick --bs-trees replicates.newick --bs-metric tbe

The RAxML package is well-known tree estimation software. Use --bs-metric fbs for Felsenstein confidence or --bs-metric tbe for transfer expectation.

120,000 new RNA virus species discovered by mining the SRA (paper).

Syncmers are better than minimizers (paper).

Video talks on 16S data analysis posted.

URMAP ultra-fast read mapper (paper).

~20% of taxonomy annotations in SILVA and Greengenes are wrong (paper).

Taxonomy prediction is <50% accurate for 16S V4 sequences (paper).

97% OTU threshold is wrong for species, should be 99% for full-length 16S, 100% V4 (paper).