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maxcc command
Extract the MSA with highest
column confidence
from an
ensemble
.
Example
muscle -maxcc diversified_ensemble.efa -output maxcc.afa
120,000 new RNA virus species discovered
by mining the SRA (
paper
).
Syncmers are better than minimizers (
paper
).
Video talks
on 16S data analysis posted.
URMAP
ultra-fast read mapper (
paper)
.
~20% of taxonomy annotations in SILVA and Greengenes are wrong (
paper
).
Taxonomy prediction is <50% accurate for 16S V4 sequences (
paper
).
97% OTU threshold is wrong for species, should be 99% for full-length 16S, 100% V4 (
paper
).