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usearch
manual
SSU sequence databases
See also
SSU metagenomics
OTU clustering
Database home page
Downloads
Greengenes
http://greengenes.lbl.gov/Download/
RDP
http://rdp.cme.msu.edu/misc/resources.jsp
Ex-Taxon-e
ARB
http://www.arb-home.de/downloads.html
SILVA
http://www.arb-silva.de/download/archive/
Microbiome Utilities
http://sourceforge.net/projects/microbiomeutil/files/
UNITE
(ITS)
http://unite.ut.ee/repository.php