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usearch
manual
Parsimony score options
See also
uparse_ref
cluster_otus
Option
Default
Description
‑uparse_match
0.0
Parsimony score for matching pair of letters.
‑uparse_mismatch
-1.0
Parsimony score for mismatch.
‑uparse_break
-3.0
Parsimony score for chimeric breakpoint.