See also
UPARSE benchmark home
USEARCH benchmark home
For methods, see Edgar & Flyvbjerg (2015).
| Program | Mean match Q error |
Mean mismatch Q error |
Random merge test |
| BBmerge v8.82 | -6.1 | -0.5 | Pass |
| COPE v1.1.2 | -15.3 | 13.6 (25% wrong sign) |
Pass |
| FLASH v1.2.11 | -8.8 | -0.4 | Pass |
|
fastq-join Download 21 Nov 2015 |
-8.7 | -0.3 | Pass |
|
mothur v.1.36.1 Make.contigs |
(Uses PANDAseq method to calculate Qs, but recommends not to use for quality filtering). | Fail (100% assembled) (May not be a problem if mothur SOPs are followed). |
|
| PANDAseq v2.8 | -21.6 (73% wrong sign) |
-11.6 (20% wrong sign) |
Fail (~70% assembled) |
| PEAR v0.9.5 | -1.3 | 15.11 (27% wrong sign) |
Pass |
|
SeqPrep Dated 6 Jan 2015 |
7.3 | -0.6 | Pass |
| USEARCH v8.1 fastq_mergepairs | 0 | 0 | Pass |