See also
UCLUST algorithm
Centroids and sort order
Abundance estimation
sortbysize command
Global trimming
Abundance sorting
Abundance sorting is used for clustering when more more abundant sequences
make better centroids. This is often the case, for example, in 16S OTU
clustering of next-generation sequencing reads. In this case, more abundant
sequences are likely to be accurate biological sequences while rare or singleton
reads are more likely to contain sequencing errors or be due to PCR artifacts
such as chimeras.
It is strongly recommended that
amplicon read sequences are
globally trimmed before clustering and
abundance sorting.
|