|
Field |
|
Description |
|
query |
|
Query label. |
|
target |
|
Target label. |
|
evalue |
|
E-value calculated using
Karlin-Altschul
statistics. |
|
id |
|
Percent identity. |
|
pctpv |
|
Percent positives (substitution score >
0). |
|
pctgaps |
|
Percent gaps. |
|
pairs |
|
Number of letter pairs. |
|
gaps |
|
Number of gapped columns. |
|
qlo |
|
0-based start in query. Coordinates are relative to the start of the
sequence as it appears in the input file. |
|
qhi |
|
0-based end in query. Coordinates are relative to the start of the
sequence as it appears in the input file. |
|
tlo |
|
0-based start in target. Coordinates are relative to the start of the
sequence as it appears in the input file. |
|
thi |
|
0-based end in target. Coordinates are relative to the start of the
sequence as it appears in the input file. |
|
pv |
|
Number of positives (substitution score >
0). |
|
ql |
|
Query sequence length. |
|
tl |
|
Target sequence length. |
|
qs |
|
Query segment length. |
|
ts |
|
Target segment length. |
|
alnlen |
|
Alignment length (columns). |
|
opens |
|
Number of gap open columns. |
|
exts |
|
Number of gap extension columns. |
|
raw |
|
Raw score. |
|
bits |
|
Bit score calculated using Karlin-Altschul statistics. |
|
aln |
|
Alignment columns specified as string with M=match,
D=delete (gap in query) and I=insert (gap in target). |
|
caln |
|
Compressed
alignment. |
|
qstrand |
|
Query strand (+ or -). Nucleotide sequences only, |
|
tstrand |
|
Target strand (+ or -). Nucleotide sequences only. This is currently always +, so
reverse strand matches have tstrand + and qstrand -. |
|
qrow |
|
Query row. Letters of the query segment with gaps
inserted as needed. |
|
trow |
|
Target row. Letters of the target segment with gaps
inserted as needed. |
|
qframe |
|
Query frame (-3 to +3). |
|
tframe |
|
Target frame (-3 to +3). |
|
mism |
|
Number of mismatch columns. |
|
ids |
|
Number of columns containing identical
letters. |
|
qcov |
|
Query coverage, fraction of query sequence that is
aligned (0.0 to 1.0). |
|
tcov |
|
Target coverage, fraction of query sequence that is
aligned (0.0 to 1.0). |