See also
OTU / denoising pipeline
Generating an OTU table
Commands which support generating OTU tables understand the following options. The most commonly used commands are otutab and closed_ref.
-mapout filename
Tab-separated text file which maps reads to OTUs.
There is one read per line with two fields: the read label and the OTU identifier.
-otutabout filename
QIIME classic tabbed
text format.
-biomout filename
BIOM v1.0 format (JSON). The
biom
utility can be used to convert to
BIOM v2.1 format (HDF5).
-mothur_shared_out filename
Mothur "shared" file.