allpairs_global | All-vs-all global alignment | |
allpairs_local | All-vs-all local alignment | |
pairs_global | Make pair-wise global alignments | |
pairs_local | Make pair-wise local alignments | |
sam_filter | Convert SAM alignments to BLAST6 or human-readable format | |
search_16s | Find 16S genes in chromosomes or contigs | |
search_pcr | Search for amplicons (matches to primer pairs) | |
sortbylength | Sort by decresing sequence length | |
sortbysize | Sort by decresing abundance (size= annotations) | |
udb2bitvec | Create bit vector index for search_16s |