See also
Python scripts home page
Amplicon
read layout
| Script | Description |
| fasta_number.py | Replace FASTA labels with xxx1, xxx2, xxx3 etc, where xxx is a prefix provided as a commend-line argument. Used e.g. to label OTUs as OTU_1, OTU_2 etc. |
|
fastq_strip_barcode_relabel.py |
Strips barcode and primer, adds barcode sequence or barcode label to read label. |
|
faqual2fastq.py |
Converts from FASTA + QUAL format to FASTQ. |
| uc2otutab.py | Converts .uc output file from mapping reads to OTUs to an OTU table in tabbed text format. |