See also
OTU commands
OTU table
Creating an OTU table
Extract a subset of OTUs from an OTU table. Input must be
in QIIME classic format. The -output option
gives a filename for the result.
The -labels option gives the name of
a text file containing the OTU identifiers. This is a text file with one OTU
identifier per line.
Example
usearch -otutab_otu_subset otutable.txt -labels otu_ids.txt -output subset.txt