| |
Bug |
First ver |
Fixed ver |
Description |
| |
9.1 |
9.0 |
9.0.2130 |
Serious bug The cluster_otus
chimera detection is badly broken in v9.0.2124. Do not use cluster_otus in v9.0.2124!
|
| |
9.2 |
9.0 |
9.0.2133 |
Labels generated by -relabel option of -cluster_otus had gaps in the
numbering, e.g. there might be Otu19 and Otu21 but no Otu20.
|
| |
9.3 |
9.0 |
9.0.2159 |
-annot failed to recognize some database hits that should be classified as "db_perfect",
were identified as "other".
|
| |
9.4 |
9.0 |
9.0.2161 |
-unoise failed to include the abundance contribution of error-corrected input
sequences with size < minampsize to the correct sequence abundance. The result
is that the size= annotations in the output were systematically under-estimated.
This should not usually matter much in practice.
|
| |
9.5 |
9.0 |
9.1 |
-cluster_agg command fatal error "Agg needs to be reimplemented".
|
| |
9.6 |
9.0 |
10.0 |
malloc.c:2372: sysmalloc: Assertion `(old_top == (((mbinptr) (((char *)... See
Malloc bug in version 9 for workaround and
discussion.
|
| |
9.7 |
9.1 |
|
unoise2 command produces empty -tabbout file.
|
| |
9.8 |
9.0 |
|
calc_distmx fatal error "SparseDistMx::ToFile not implemented". Workaround is to
use v8.1.
|
| |
9.9 |
9.1.13 |
|
Serious bug uchime2_denovo
does not work in v9.1.13, no chimeras are found. The chimera detection in
unoise2 in v9.1.13 fails for the same reason. Work-around is to use unoise and
uchime2_denovo in v9.0.
|
| |
9.10 |
8.1 |
|
search_pcr fails with -pcr_strip_primers. Work-around is to use -fastx_truncate
to strip the primer sequences.
|
| |
9.11 |
9.0 |
no fix planned |
The otu_radius_pct option of cluster_otus has
no effect, clustering is always performed at 97%. In future builds this option
will be removed, see UPARSE OTU radius for
discussion.
|
| |
9.12 |
9.0 |
9.2 |
-cluster_aggd gives fatal error "SparseMx::FromFile not implemented.
|
| |
9.13 |
9.0 |
|
The uniq=xxx annotations in the -otudbout output from the unoise2 command are
wrong.
|
| |
9.14 |
9.0 |
9.2.118 |
The "XX uniques written" message from fastx_uniques reports an incorrect number
of sequences.
|
| |
9.15 |
9.0 |
9.2.130 |
-fulldp option causes segfault or fatal error.
|
| |
9.16 |
9.0 |
9.2.152 |
-min_freq option of otutab_trim did not work.
|
| |
9.17 |
9.0 |
10.0 |
-cluster_agg fatal error "TreeToClusters not implemented". Work-around is to use
v8.1.
|
| |
9.18 |
9.0 |
10.0 |
Fatal error " SampleIndex < m_SampleCount" with some otu commands.
|
| |
9.19 |
9.0 |
10.0.537 |
The fastq_merge_maxee option of fastq_mergepairs does not work. Work-around is
to use fastq_filter.
|