|
Option |
|
Description |
|
-uchimeout |
|
Tabbed output file. The
‑uchimeout5 option sets the uchimeout format to be
compatible with v5 and earlier versions of usearch. |
|
-uchimealns |
|
Human-readable 3-way
alignments of query to putative parents. |
|
-chimeras |
|
FASTA file with
sequences classified as chimeric. |
|
-nonchimeras |
|
FASTA file with
sequences classified as not chimeric. |
|
-chimerasq |
|
FASTQ file with
sequences classified as chimeric (v8.0.1616 or later). |
|
-nonchimerasq |
|
FASTQ file with
sequences classified as not chimeric (v8.0.1616 or later). |