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Benchmark data and scripts
All files in .tar.gz format
FASTA files (test and training sets)
Bash scripts
Python scripts
Method wrapper scripts
Benchmark results
Cross-validation by identity (tables and charts)
Cross-validation by identity (metrics)
Leave-one-out (tables and charts)
Leave-one-out (metrics)
Lowest Common Rank probabilities
Documentation
How to install and run TAXXI
How to test a new method
Dataset names
Method names
Support
Please email the author with technical questions.
Citation
Edgar (2018), Accuracy of taxonomy prediction for
16S rRNA and fungal ITS sequences,
PeerJ
6:e4652;
DOI 10.7717/peerj.4652
.