| USEARCH manual > commands > findorfs |
| findorfs command |
| The findorfs command finds ORFs in nucleotide sequences. If the ‑xlat option is specified, ORFs are translated to amino acids. The -orfstyle and ‑mincodons options control ORF identification. The ‑output option specifies the output filename. Example usearch -findorfs reads.fasta -output
orfs.fasta -xlat -orfstyle 7 -mincodons 16 |