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URMAP

Documentation

Getting started
  Downloads
  Installation
  Quick start

Commands
  make_ufi  Create reference genome index
  map  Map unpaired reads
  map2  Map paired-end reads
  sum2sam  Convert alignments in SUM format to SAM
  sum2aln  Convert SUM format to BLAST-like readable alignments
  sam2aln  Convert SAM format to BLAST-like readable alignments

Topics
  SUM file format
  SAM file format