#!/bin/bash

name=$1

testfa=../testfa/$name
trainfa=../trainfa/$name

if [ ! -f $testfa ] ; then
	echo Not found testfa=$testfa >> /dev/stderr
	exit 1
fi

if [ ! -f $trainfa ] ; then
	echo Not found trainfa=$trainfa >> /dev/stderr
	exit 1
fi

mkdir -p ../raw/spingo

raw=../raw/spingo/$name
traindir=../train/spingo/$name

mkdir -p $traindir

python2 $r/py/fasta_utax2spingo.py $trainfa > $traindir/db.fa

$spingo -i $testfa -d $traindir/db.fa -p 8 > $raw

mkdir -p ../pred/spingo

python2 /zip_e/r/py/spingo2tab.py $raw > ../pred/spingo/$name