Translated search benchmark PDB90-X

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PDB90 Methods

Translated search test results on PDB90-X
UBLAST and BLASTX are compared. UBLAST results are shown for typical values of the accel parameter, which the user can set to achieve a desired trade-off between speed and sensitivity. Values of accel range from 100% (maximum sensitivity, slower speed) to 1% (fastest speed, lower sensitivity). Sensitivity is measured using all hits rather than the top hit or top few hits.