Protein search benchmark PDB90-R

USEARCH performance home page.
PDB90 Methods

Protein search test results on PDB90-R
UBLAST and BLASTP are compared. UBLAST results are shown for typical values of the accel parameter, which the user can set to achieve a desired trade-off between speed and sensitivity. Values of accel range from 100% (maximum sensitivity, slower speed) to 1% (fastest speed, lower sensitivity). Here, sensitivity is measured using all hits rather than the top hit or top few hits.