Home Software Services About Contact     
 
USEARCH v11

File format conversions

This table summarizes file format conversion commands in USEARCH. If you need support for other formats, let me know.

From format To format Command-line
FASTQ FASTA usearch -fastq_filter in.fastq -fastaout out.fasta
SAM human-readable alignments usearch -sam_filter in.sam -alnout out.aln
SAM BLAST -outfmt 6 usearch -sam_filter in.sam -blast6out out.b6
UDB FASTA usearch -udb2fasta in.udb -fastaout out.fasta