pilercr
v1.0
By
Robert C. Edgar
/p/db/bact/fasta/Acinetobacter_calcoaceticus:
3 putative CRISPR arrays found.
DETAIL
REPORT
Array
1
>gi|50083297|ref|NC_005966.1|
Acinetobacter sp. ADP1, complete genome
Pos Repeat
%id Spacer
Left flank Repeat
Spacer
==========
====== ======
====== ==========
============================
======
2339398 28
100.0 32
AGAAGCAAGA ............................
CAGAAACGGCGGGTACACGTGTCACGGTGAAT
2339458 28
100.0 32
CACGGTGAAT ............................
ATCGCTATTCTGACCCAGAAATTAACAATCAC
2339518 28
100.0 32
TAACAATCAC ............................
TCATGATACGTGCAGTACCATCTGCTGGATTA
2339578 28
96.4 32
TGCTGGATTA
....................T.......
ACTTAATGCGGAACCGACATCTGTACTAGTGA
2339638 28
100.0 32
GTACTAGTGA ............................
TATTGAGCAAGCGATTGACGGTTATGCGCGTT
2339698 28
100.0
TATGCGCGTT ............................
AGTAAATATTG
==========
====== ======
====== ==========
============================
6 28
32
TTTCTAAGCTGCCTGTGCGGCAGTTAAG
Array
2
>gi|50083297|ref|NC_005966.1|
Acinetobacter sp. ADP1, complete genome
Pos Repeat
%id Spacer
Left flank Repeat
Spacer
==========
====== ======
====== ==========
============================
======
2371799 28
100.0 32
CTTTCTTACT ............................
TCACACTGCACTTGCGATTGGGGCACTATCAA
2371859 28
100.0 32
GCACTATCAA ............................
AATGTCGTGAACACTCAGACAGGCGGATACCA
2371919 28
100.0 33
GCGGATACCA ............................
CGACAGAGCAAGACATCACTGATATGTCGAATT
2371980 28
100.0 32
ATGTCGAATT ............................
GCAGTCGGACAACTTCAATCGAACGCATCATC
2372040 28
100.0 32
ACGCATCATC ............................
CTGCTTCTCGGTCATCCTTAAATCTGAATGAG
2372100 28
100.0 32
TCTGAATGAG ............................
TCACACTGCACTTGCGATTGGGGCACTATCAA
2372160 28
100.0 32
GCACTATCAA ............................
AATGTCGTGAACACTCAGACAGGCGGATACCA
2372220 28
100.0 33
GCGGATACCA ............................
CGACAGAGCAAGACATCACTGATATGTCGAATT
2372281 28
100.0 32
ATGTCGAATT ............................
GCAGTCGGACAACTTCAATCGAACGCATCATC
2372341 28
100.0 32
ACGCATCATC ............................
CTGCTTCTCGGTCATCCTTAAATCTGAATGAG
2372401 28
100.0 32
TCTGAATGAG ............................
TTCCACCAATCAAGAGTGGATTGGTCAATAGT
2372461 28
100.0 32
GGTCAATAGT ............................
AGTCGACCGCGAGACGGGAAAAAGTACGAACA
2372521 28
100.0 32
AGTACGAACA ............................
CGTAGACTGCCACCACCGCACCCCCATACATT
2372581 28
100.0 32
CCCATACATT ............................
TCGCGCAATCCATCGCGAGGGGCCTATTCGAG
2372641 28
100.0 32
CCTATTCGAG ............................
AATGAGAAAATCAAACCACCCATGATGATCGT
2372701 28
100.0 28
TGATGATCGT ............................
TACTCGAACTTGTCTGTCATATTGCCCT
2372757 28
89.3 32
ATATTGCCCT TAC.........................
TGAATACTCAAATGACAATAAACAGGATAAAG
2372817 28
100.0 32
CAGGATAAAG ............................
TGTGAACAAATCCGTTGTAAGCCGCGCCTTAT
2372877 28
100.0 32
CGCGCCTTAT ............................
ATTTAAAAGCCACTCATCTGACACACCTAAAA
2372937 28
100.0 33
ACACCTAAAA ............................
TTATCGAAGTATTCTGCTTTGGGTGCGGCAATG
2372998 28
100.0
TGCGGCAATG ............................
ACCAGAAATGATTCCAGATATTCCAGATGAATCC
==========
====== ======
====== ==========
============================
21 28
31
CTTCACTACCGCACAGGTAGCTTAGAAA
Array
3
>gi|50083297|ref|NC_005966.1|
Acinetobacter sp. ADP1, complete genome
Pos Repeat
%id Spacer
Left flank Repeat
Spacer
==========
====== ======
====== ==========
============================
======
2448115 28
100.0 32
CTTAACTCTA ............................
GACACCAAAGGTAATAAAGCTATGAAAGAATA
2448175 28
100.0 32
TGAAAGAATA ............................
TTTACTCTTATTATACTATTACCCCTAACCCC
2448235 28
100.0 32
CCCTAACCCC ............................
TCCAGCTAAAATCGTTTGAGGGTGAAACTCCT
2448295 28
100.0 32
TGAAACTCCT ............................
ATGATTTCGAAAGGCTCTCCGAGTACGTTATT
2448355 28
100.0 32
GTACGTTATT ............................
ATTCCCAGCATTCACGCTGAGTGCTTCGGCAC
2448415 28
100.0 32
GCTTCGGCAC ............................
TGTGCAGCCGTTTGGCGCGCCCCAGATATGCG
2448475 28
100.0 32
CAGATATGCG ............................
AGGAACCGTGGCAGATTGCGTTAATATGTTAG
2448535 28
100.0 32
AATATGTTAG ............................
TAACGATGGAATAACGTTCAAAGAATCTAACG
2448595 28
100.0 32
GAATCTAACG ............................
AATTCATGAAAGATCATTCGCTGTGTTTGGGG
2448655 28
100.0 32
GTGTTTGGGG ............................
ATTTGCCGCTTTGAATATTTGATGCACCTGCT
2448715 28
100.0 32
TGCACCTGCT ............................
AAATCGATGAGGGACAACATCAGGCACTCGAC
2448775 28
100.0 32
GGCACTCGAC ............................
ACAGGGCAGGGAAATAACCAAAAATCGATATA
2448835 28
100.0 32
AATCGATATA ............................
GACATAGGAACGATATGAAGATGATTTTTTTT
2448895 28
100.0 32
GATTTTTTTT ............................
ATCAAGCTATCGTCATTTGGCCGATACACAGC
2448955 28
100.0 32
GATACACAGC ............................
TCTGCCATGCATACAATTTGATTTGGCTGCGT
2449015 28
100.0 32
TTGGCTGCGT ............................
AATCATCAATATCTTTTTGCGCTTTGCGTGAA
2449075 28
100.0 32
TTTGCGTGAA ............................
TCTCACGTACAAAAAAAAATCCTATTTGATGT
2449135 28
100.0 32
TATTTGATGT ............................
GCGATTGAATACCGATAGATCGGGGATATTAA
2449195 28
100.0 33
GGGATATTAA ............................
ATACACTACATTGAACTGCTCGGACTTAAGCAT
2449256 28
100.0 32
ACTTAAGCAT ............................
AAAAAAAGTGTAGCCAACTTCATACAGTTACC
2449316 28
100.0 32
TACAGTTACC ............................
CAGGTGGCAGCGTTCCATTTTCGGGGGCAAAT
2449376 28
100.0 32
GGGGGCAAAT ............................
AAAACCACATTATAAGGCTCGGTAAATGTGTA
2449436 28
100.0 32
TAAATGTGTA ............................
ATGAAAATAAGCCCCAATATTGTCAGTGTTCC
2449496 28
100.0 32
TCAGTGTTCC ............................
GTTTCCGCGTCATTCGGGTACAGTTGCGACAT
2449556 28
100.0 32
GTTGCGACAT ............................
TTGAAACCTATGAACTTTGTGTTATACGTGTC
2449616 28
100.0 32
TATACGTGTC ............................
CTTATCAAAATCGGTGGGATCTTTGTCGTACT
2449676 28
100.0 32
TTGTCGTACT ............................
GAATTATGCTTTAAAAAATCCTTTCGCGGGTA
2449736 28
100.0 32
TTCGCGGGTA ............................
AATCCGATTTCTGCTGTTGCTGGGGTTAGAGC
2449796 28
100.0 32
GGGTTAGAGC ............................
ATGTACTATAAGTCACATGGTAAAGACACGAA
2449856 28
100.0 32
AAGACACGAA ............................
GAAACGTTGAATCCAGAACCAGCAATCCCAGC
2449916 28
100.0 32
CAATCCCAGC ............................
AAACTGTGGAGCATTACATCTACCATACTGCC
2449976 28
100.0 32
CCATACTGCC ............................
TAAAACAGTCAATGTTAATTGGGGTGAACAAT
2450036 28
100.0 32
GGTGAACAAT ............................
GCGGTAGCTGGCGCGGTGTTTGCGTTTTTTGG
2450096 28
100.0 32
CGTTTTTTGG ............................
TATAACTAGCATGTCAGAAATAAAACTATCCG
2450156 28
100.0 32
AAACTATCCG ............................
CGTTGGTACTGTTGCAGGTGGTGCATTGGGGA
2450216 28
100.0 32
GCATTGGGGA ............................
GACTCCGCTACTTAAGAAAGAGAGCATAGGTG
2450276 28
100.0 32
AGCATAGGTG ............................
TAGAAGTAACTTACGATAACATCTTTGGCGCC
2450336 28
100.0 32
CTTTGGCGCC ............................
TCAAGCATGTGATCACTAATGATTCGGTTTTT
2450396 28
100.0 32
TTCGGTTTTT ............................
TATACTCCTTATATGTAATTTACGCGTAAACC
2450456 28
100.0 32
CGCGTAAACC ............................
CACTACATTTATACCCGCCGTTTACGCTCTTA
2450516 28
100.0 32
TACGCTCTTA ............................
GTTTAATGTGGCGTTCAGGTCTTGTTCGCCAA
2450576 28
100.0 32
TGTTCGCCAA ............................
ACTCAGTTGACCAATCTTACTGCTTCACTTAA
2450636 28
100.0 32
CTTCACTTAA ............................
AGAAGATTTGGTGGGCAAAAATATGGAATATA
2450696 28
100.0 32
ATGGAATATA ............................
ATTCTTAGCTGCATCACGCAAGATTTGCTTTT
2450756 28
100.0 32
ATTTGCTTTT ............................
CTCATCGAAACATACATTGAGAAAAATCATTT
2450816 28
100.0 32
AAAATCATTT ............................
AATCATCATCGACCGCAGTATTGAAGCGAAGC
2450876 28
100.0 32
GAAGCGAAGC ............................
AGCCCTTCGTATATTTGAATAGTGCATTGGCT
2450936 28
100.0 31
TGCATTGGCT ............................
AAAAATACCCGCGCCCAAGTGATCCTGAAGA
2450995 28
100.0 32
ATCCTGAAGA ............................
AACCATATAGAATTGTTAACTTTTGTAAATAA
2451055 28
100.0 32
TTGTAAATAA ............................
GATCAAAACAACAAGCGTACCAATGATGCCGA
2451115 28
100.0 32
ATGATGCCGA ............................
ACAAGGGATGTATTGACCAGGTGTGAGCGCAA
2451175 28
100.0 32
GTGAGCGCAA ............................
ATTCTTGAGCCGCCTGCAGATTTGTTATGTCA
2451235 28
100.0 32
TGTTATGTCA ............................
ATGGTTCGGGGTTGTAGCTGTACGCCCCAGAT
2451295 28
100.0 32
CGCCCCAGAT ............................
AAGAGCAAAAGGTAACTTGGATCTACCGCCAC
2451355 28
100.0 32
CTACCGCCAC ............................
CACGGAAATTGGAATGATGATTTCGACGGTAA
2451415 28
100.0 32
TCGACGGTAA ............................
TTGTTGAGCAGCAGAACGGCCTTTTACCAACC
2451475 28
100.0 32
TTTACCAACC ............................
AGATACCTCAGTCCAAGCTGCTGAATTTTATC
2451535 28
100.0 32
GAATTTTATC ............................
AAGAGACAACAGGGCTTATTAAAGTAACTTGT
2451595 28
100.0 32
AGTAACTTGT ............................
AAGTTTTATTTAAGCCCAAAGCTAAAGATAGT
2451655 28
100.0 32
TAAAGATAGT ............................
GTTAGCTGCACAAGCTCTGGGACTTTAATAAA
2451715 28
100.0 32
CTTTAATAAA ............................
AATCGCTAACCAGTAGAACCCGCGTAGCAGCG
2451775 28
100.0 32
CGTAGCAGCG ............................
AAGCGTTGCGAGCGCTCAAAAAGTGGCTGATC
2451835 28
100.0 32
GTGGCTGATC ............................
GTCTACCAAAGCGAAAGTATCATTTTCAATGA
2451895 28
100.0 32
TTTTCAATGA ............................
TGTATCGGAGCTACGTCAGAAGGTCAAGCACA
2451955 28
100.0 32
GTCAAGCACA ............................
AGGTCGATTTATCATAAACATCGGGCACGATA
2452015 28
100.0 32
GGGCACGATA ............................
GCCAGAAATTTTGACACTTGCGTTTAGCAATA
2452075 28
100.0 32
TTTAGCAATA ............................
AGATTGTCTCTAAATTTAACGCGTGGCTTTGT
2452135 28
100.0 32
GTGGCTTTGT ............................
AAAGCCGAGCCCAACTTTTGACGCACAAAAAG
2452195 28
100.0 32
GCACAAAAAG ............................
GTCAGTGATTGCTTTCATTGCCGTAGCTACGT
2452255 28
100.0 32
GTAGCTACGT ............................
ATCCGCGCCCAATTTGTCCCACCAATCTTTTT
2452315 28
100.0 32
CAATCTTTTT ............................
GATTCCATAGAACGTACCATTGACGCGCAACA
2452375 28
100.0 32
ACGCGCAACA ............................
TGGATCTCTGCAGAAATCACATTGTCCAAATA
2452435 28
100.0 32
TGTCCAAATA ............................
AACAGGCGTTACTGAGCTATGTGTCGTTAAAA
2452495 28
100.0 32
GTCGTTAAAA ............................
AAGCATGCCTTGATGCATACAACAAAATTGCC
2452555 28
100.0 32
CAAAATTGCC ............................
TGCGAGTTCAAACTTCTTTAAAGATGCAACAT
2452615 28
100.0 32
GATGCAACAT ............................
CGTGGAATCATAATCATAAGCTTCACCGACAC
2452675 28
100.0 32
TCACCGACAC ............................
GATCAGTGGCGCGTCTACAGTGAGCGAGTGGG
2452735 28
100.0 32
AGCGAGTGGG ............................
ATAATTGCAACAACAGCATAATATACATACCA
2452795 28
100.0 32
ATACATACCA
............................
CTTACTTTCGCTTGCGCTTCGTTACGAATGCC
2452855 28
100.0 32
TACGAATGCC ............................
TCAACCAGGATCGGATAACCATCAATTCTAAA
2452915 28
100.0 32
CAATTCTAAA ............................
AACAGGCGTTACTGAGCTATGTGTCGTTAAAA
2452975 28
100.0 32
GTCGTTAAAA ............................
AAGCATGCCTTGATGCATACAACAAAATTGCC
2453035 28
100.0 32
CAAAATTGCC ............................
CAAATGTAATCAGGATTAGTCGATTGCAGCGT
2453095 28
100.0 32
ATTGCAGCGT ............................
AGATCGCCTGTGCGTAGGTCAACTGCACCATT
2453155 28
100.0 32
CTGCACCATT ............................
AGCTGAACACGCCGTTTTTTAACTTCCGCCAT
2453215 28
100.0 32
CTTCCGCCAT ............................
ATGCACCTGATCCTGCCCAATGAGGGATTTAC
2453275 28
96.4 32
AGGGATTTAC A...........................
TGATGGTGCAGGAACCACAGCAACATCAGTCA
2453335 28
100.0 32
ACATCAGTCA ............................
GATTGAAATACTATTAAGGCTGTTCGTAAAGC
2453395 28
100.0 32
TTCGTAAAGC ............................
ACACACGCTGCCAATTCTTCGTTAGAGTGTAT
2453455 28
100.0 32
TAGAGTGTAT ............................
AGCAGTAAAAGCCATGACCGTTAAGATCGCTC
2453515 28
100.0
AAGATCGCTC ............................
TATTAAAAGC
==========
====== ======
====== ==========
============================
91 28
32
GTTCGTCATCGCATAGATGATTTAGAAA
SUMMARY
BY SIMILARITY
Array
Sequence Position
Length #
Copies Repeat Spacer
+ Consensus
=====
================ ==========
========== ========
====== ======
= =========
1
gi|50083297|ref| 2339398
328
6
28 32
+ TTTCTAAGCTGCCTGTGCGGCAGTTAAG
2
gi|50083297|ref| 2371799
1227
21
28 31
- TTTCTAAGCTACCTGTGCGGTAGTGAAG
**********
********* *** ***
3
gi|50083297|ref| 2448115
5428
91
28 32
+ GTTCGTCATCGCATAGATGATTTAGAAA
SUMMARY
BY POSITION
>gi|50083297|ref|NC_005966.1|
Acinetobacter sp. ADP1, complete genome
Array
Sequence
Position Length
# Copies Repeat
Spacer Distance
Consensus
=====
================ ==========
========== ========
====== ======
========== =========
1
gi|50083297|ref| 2339398
328
6
28 32
TTTCTAAGCTGCCTGTGCGGCAGTTAAG
2
gi|50083297|ref| 2371799
1227
21
28 31
32041 CTTCACTACCGCACAGGTAGCTTAGAAA
3
gi|50083297|ref| 2448115
5428
91
28 32
75058 GTTCGTCATCGCATAGATGATTTAGAAA