PILER is public domain software for
analyzing repetitive DNA found in genome sequences.
Click here to download PILER source code
only, 34 kb file, tarball (.tar.gz) format.
Click here to download Mac OSX
source and binaries for PALS and PILER.
Click here to download the rm2gff.py and
trs_report.py python scripts.
You will also need MUSCLE
and a whole-genome local aligner. You can use PALS for this, but please
note that PALS is considered
obsolete and is no longer supported. See the
PALS home page for discussion.
Manual as a PDF file
Manual as a web page
Please cite this paper:
R.C. Edgar and E.W. Myers, PILER: identification and classification
of genomic repeats.
2005 Jun 1;21 Suppl 1:i152-i158