Benchmark collection

This is the download page for a collection of protein sequence alignment benchmarks including BALIBASE v3, PREFAB v4, OXBENCH, and SABRE. These have been converted to a standard FASTA format that is convenient for further analysis. Accuracy scores for some selected methods are included to allow third party verification of my results.

A paper is in submission. For now you can cite this URL: Edgar, R.C., /bench.
Click here to download bench.tar.gz (approx 21Mb).

This is tarball format, use tar -zxf bench.tar.gz to extract.

Alignment accuracies are computed using the qscore program.